I have tested the official gitian build from 0.12.1 on Ubuntu 16.04 as well as self-compiled on 15.04 and came to the same error-behavior: Clicking on the tray icon reveals no or an empty menu.
Could be an Qt upstream bug.
<img width="912" alt="bildschirmfoto 2016-05-11 um 21 41 27" src="https://cloud.githubusercontent.com/assets/178464/15194514/8a2d4a7c-17c3-11e6-8531-86d329e7646d.png"> <img width="1066" alt="bildschirmfoto 2016-05-11 um 20 28 23" src="https://cloud.githubusercontent.com/assets/178464/15194516/8a53b2f2-17c3-11e6-8ebf-66e19563b17f.png">