Transform the inputs after the format change in https://github.com/bitcoin/bitcoin/commit/fa6b87b9ee661d8ef4ec244d230ebdeb7d1841a0
Done by nuking the first 4 bytes with something like:
0for f in ./script_flags/* ; do python -c "fn=\"$f\"; print(fn); open(fn+'.new', 'wb').write(open(fn,'rb').read()[4:]);" ; done